IL_8B2L_056
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGCCAAAC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_056 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1463
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|A3|U|1184
8B2L|1|A3|G|1185
8B2L|1|A3|C|1186
8B2L|1|A3|C|1187
8B2L|1|A3|A|1188
8B2L|1|A3|A|1189
8B2L|1|A3|A|1190
8B2L|1|A3|C|1191
*
8B2L|1|A3|G|1337
8B2L|1|A3|A|1338
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain I3
- 60S ribosomal protein L18a
- Chain S3
- eL33 (60S ribosomal protein L35a)
- Chain d3
- uL13 (60S ribosomal protein L13a)
- Chain q3
- 60S ribosomal protein L7-4-like
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