IL_8B2L_058
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUAACCUAG*CUUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8B2L|1|A3|C|1202, 8B2L|1|A3|C|1203, 8B2L|1|A3|U|1204, 8B2L|1|A3|U|1328, 8B2L|1|A3|A|1330
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_058 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.1396
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|A3|C|1198
8B2L|1|A3|U|1199
8B2L|1|A3|A|1200
8B2L|1|A3|A|1201
8B2L|1|A3|C|1202
8B2L|1|A3|C|1203
8B2L|1|A3|U|1204
8B2L|1|A3|A|1205
8B2L|1|A3|G|1206
*
8B2L|1|A3|C|1326
8B2L|1|A3|U|1327
8B2L|1|A3|U|1328
8B2L|1|A3|A|1329
8B2L|1|A3|A|1330
8B2L|1|A3|G|1331
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain E3
- 60S ribosomal protein L14-1
- Chain I3
- 60S ribosomal protein L18a
- Chain Y3
- ubiquitin-60S ribosomal protein L40
- Chain d3
- uL13 (60S ribosomal protein L13a)
- Chain u3
- uL6 (60S ribosomal protein L9)
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