IL_8B2L_071
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|A3|A|1593, 8B2L|1|A3|A|1594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_071 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.0715
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8B2L|1|A3|C|1543
8B2L|1|A3|U|1544
8B2L|1|A3|A|1545
8B2L|1|A3|A|1546
8B2L|1|A3|G|1547
*
8B2L|1|A3|C|1590
8B2L|1|A3|G|1591
8B2L|1|A3|A|1592
8B2L|1|A3|A|1593
8B2L|1|A3|A|1594
8B2L|1|A3|G|1595
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T3
- 60S ribosomal protein L34
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
- Chain o3
- uL2 (60S ribosomal protein L8)
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