IL_8B2L_079

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGU*AGGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_079 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2648

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8B2L|1|A3|G|1649
8B2L|1|A3|A|1650
8B2L|1|A3|A|1651
8B2L|1|A3|G|1652
8B2L|1|A3|U|1653
*
8B2L|1|A3|A|1812
8B2L|1|A3|G|1813
8B2L|1|A3|G|1814
8B2L|1|A3|A|1815
8B2L|1|A3|C|1816

Current chains

Chain A3

25S rRNA

Nearby chains

Chain M3

eL27 (60S ribosomal protein L27)

Chain T3

60S ribosomal protein L34

Chain o3

uL2 (60S ribosomal protein L8)