IL_8B2L_087
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGGAAAC*GGAGGUA
- Length
- 14 nucleotides
- Bulged bases
- 8B2L|1|A3|A|1721, 8B2L|1|A3|A|1734
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_087 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.111
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|A3|U|1716
8B2L|1|A3|G|1717
8B2L|1|A3|G|1718
8B2L|1|A3|A|1719
8B2L|1|A3|A|1720
8B2L|1|A3|A|1721
8B2L|1|A3|C|1722
*
8B2L|1|A3|G|1732
8B2L|1|A3|G|1733
8B2L|1|A3|A|1734
8B2L|1|A3|G|1735
8B2L|1|A3|G|1736
8B2L|1|A3|U|1737
8B2L|1|A3|A|1738
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain H3
- Ribosomal protein L19
- Chain M3
- eL27 (60S ribosomal protein L27)
- Chain P3
- 60S ribosomal protein L30-like
- Chain W1
- 30S ribosomal protein S15, chloroplastic
- Chain a3
- 60S ribosomal protein L37a
Coloring options: