IL_8B2L_088

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AACAA(OMU)G*C(OMU)AU

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_088 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0949

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8B2L|1|A3|A|1889
8B2L|1|A3|A|1890
8B2L|1|A3|C|1891
8B2L|1|A3|A|1892
8B2L|1|A3|A|1893
8B2L|1|A3|OMU|1894
8B2L|1|A3|G|1895
*
8B2L|1|A3|C|2349
8B2L|1|A3|OMU|2350
8B2L|1|A3|A|2351
8B2L|1|A3|U|2352

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Q3

eL31 (60S ribosomal protein L31)

Chain j3

50S ribosomal protein L22, chloroplastic

Chain r3

uL3 (60S ribosomal protein L3)