IL_8B2L_144
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAAU*AGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8B2L|1|A3|A|3144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_144 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.1626
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8B2L|1|A3|C|3006
8B2L|1|A3|A|3007
8B2L|1|A3|A|3008
8B2L|1|A3|U|3009
*
8B2L|1|A3|A|3141
8B2L|1|A3|G|3142
8B2L|1|A3|A|3143
8B2L|1|A3|A|3144
8B2L|1|A3|G|3145
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain d3
- uL13 (60S ribosomal protein L13a)
- Chain r3
- uL3 (60S ribosomal protein L3)
Coloring options: