IL_8B2L_146

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_146 not in the Motif Atlas

Homologous match to IL_8C3A_125

Geometric discrepancy: 0.0831

The information below is about IL_8C3A_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8B2L|1|A3|C|3020
8B2L|1|A3|C|3021
8B2L|1|A3|U|3022
8B2L|1|A3|A|3023
8B2L|1|A3|G|3024
8B2L|1|A3|U|3025
8B2L|1|A3|A|3026
8B2L|1|A3|C|3027
*
8B2L|1|A3|G|3032
8B2L|1|A3|G|3033
8B2L|1|A3|A|3034
8B2L|1|A3|A|3035
8B2L|1|A3|C|3036
8B2L|1|A3|C|3037
8B2L|1|A3|G|3038

Current chains

Chain A3

25S rRNA

Nearby chains

Chain e3

60S ribosomal protein L23

Chain r3

uL3 (60S ribosomal protein L3)

Chain u3

uL6 (60S ribosomal protein L9)