IL_8B2L_147

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAUU*ACCG

Length

9 nucleotides

Bulged bases

8B2L|1|A3|C|3094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_147 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1267

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8B2L|1|A3|C|3049
8B2L|1|A3|A|3050
8B2L|1|A3|A|3051
8B2L|1|A3|U|3052
8B2L|1|A3|U|3053
*
8B2L|1|A3|A|3093
8B2L|1|A3|C|3094
8B2L|1|A3|C|3095
8B2L|1|A3|G|3096

Current chains

Chain A3

25S rRNA

Nearby chains

Chain L3

60S ribosomal protein L24-like

Chain e3

60S ribosomal protein L23

Chain r3

uL3 (60S ribosomal protein L3)