IL_8B2L_148

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCAUCG*CGAAG

Length

11 nucleotides

Bulged bases

8B2L|1|A3|A|3058, 8B2L|1|A3|C|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_148 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1489

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8B2L|1|A3|U|3056
8B2L|1|A3|C|3057
8B2L|1|A3|A|3058
8B2L|1|A3|U|3059
8B2L|1|A3|C|3060
8B2L|1|A3|G|3061
*
8B2L|1|A3|C|3086
8B2L|1|A3|G|3087
8B2L|1|A3|A|3088
8B2L|1|A3|A|3089
8B2L|1|A3|G|3090

Current chains

Chain A3

25S rRNA

Nearby chains

Chain L3

60S ribosomal protein L24-like

Chain Q3

eL31 (60S ribosomal protein L31)

Chain r3

uL3 (60S ribosomal protein L3)