IL_8B2L_161

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUA*UUCAGC

Length

9 nucleotides

Bulged bases

8B2L|1|A3|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_161 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1127

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8B2L|1|A3|G|3320
8B2L|1|A3|U|3321
8B2L|1|A3|A|3322
*
8B2L|1|A3|U|3365
8B2L|1|A3|U|3366
8B2L|1|A3|C|3367
8B2L|1|A3|A|3368
8B2L|1|A3|G|3369
8B2L|1|A3|C|3370

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Q3

eL31 (60S ribosomal protein L31)

Chain r3

uL3 (60S ribosomal protein L3)