IL_8B2L_188

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAGU*AA

Length

6 nucleotides

Bulged bases

8B2L|1|h1|A|115, 8B2L|1|h1|G|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_188 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1203

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8B2L|1|h1|U|114
8B2L|1|h1|A|115
8B2L|1|h1|G|116
8B2L|1|h1|U|117
*
8B2L|1|h1|A|304
8B2L|1|h1|A|305

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain P1

40S ribosomal protein S8

Chain X1

40S ribosomal protein S11-like