IL_8B2L_199

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUCAA*UGGUGACG

Length

14 nucleotides

Bulged bases

8B2L|1|h1|U|317, 8B2L|1|h1|U|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_199 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1118

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8B2L|1|h1|U|315
8B2L|1|h1|A|316
8B2L|1|h1|U|317
8B2L|1|h1|C|318
8B2L|1|h1|A|319
8B2L|1|h1|A|320
*
8B2L|1|h1|U|352
8B2L|1|h1|G|353
8B2L|1|h1|G|354
8B2L|1|h1|U|355
8B2L|1|h1|G|356
8B2L|1|h1|A|357
8B2L|1|h1|C|358
8B2L|1|h1|G|359

Current chains

Chain h1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S8

Chain T1

40S ribosomal protein S23

Chain X1

40S ribosomal protein S11-like