IL_8B2L_203
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAA(PSU)C*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|h1|G|463
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_203 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.2788
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|h1|C|447
8B2L|1|h1|C|448
8B2L|1|h1|A|449
8B2L|1|h1|A|450
8B2L|1|h1|PSU|451
8B2L|1|h1|C|452
*
8B2L|1|h1|G|462
8B2L|1|h1|G|463
8B2L|1|h1|A|464
8B2L|1|h1|G|465
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain H1
- 40S ribosomal protein S24
- Chain b1
- 40S ribosomal protein S9-2-like
Coloring options: