IL_8B2L_210
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AA(PSU)UC
- Length
- 16 nucleotides
- Bulged bases
- 8B2L|1|h1|A|582, 8B2L|1|h1|U|585
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_210 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1342
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8B2L|1|h1|G|565
8B2L|1|h1|U|566
8B2L|1|h1|G|567
8B2L|1|h1|C|568
8B2L|1|h1|C|569
8B2L|1|h1|A|570
8B2L|1|h1|G|571
*
8B2L|1|h1|C|578
8B2L|1|h1|G|579
8B2L|1|h1|G|580
8B2L|1|h1|OMU|581
8B2L|1|h1|A|582
8B2L|1|h1|A|583
8B2L|1|h1|PSU|584
8B2L|1|h1|U|585
8B2L|1|h1|C|586
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain B1
- mRNA
- Chain M1
- 40S ribosomal protein S30
- Chain T1
- 40S ribosomal protein S23
- Chain a1
- 40S ribosomal protein S3-2-like
- Chain i2
- Transfer RNA; tRNA
Coloring options: