IL_8B2L_212

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_212 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1284

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8B2L|1|h1|G|619
8B2L|1|h1|U|620
8B2L|1|h1|U|621
8B2L|1|h1|A2M|622
8B2L|1|h1|A|623
8B2L|1|h1|A|624
8B2L|1|h1|A|625
*
8B2L|1|h1|U|1107
8B2L|1|h1|C|1108

Current chains

Chain h1

18S rRNA

Nearby chains

Chain J1

40S ribosomal protein S26

Chain T1

40S ribosomal protein S23

Chain c1

40S ribosomal protein S2-3-like