IL_8B2L_214
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_214 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0879
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8B2L|1|h1|C|630
8B2L|1|h1|G|631
8B2L|1|h1|U|632
8B2L|1|h1|A|633
8B2L|1|h1|G|634
*
8B2L|1|h1|U|971
8B2L|1|h1|C|972
8B2L|1|h1|A|973
8B2L|1|h1|A|974
8B2L|1|h1|G|975
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain T1
- 40S ribosomal protein S23
- Chain W1
- 30S ribosomal protein S15, chloroplastic
- Chain X1
- 40S ribosomal protein S11-like
- Chain e1
- 40S ribosomal protein S15a-1
Coloring options: