IL_8B2L_223

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGUC*GGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_223 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.0757

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8B2L|1|h1|A|874
8B2L|1|h1|G|875
8B2L|1|h1|U|876
8B2L|1|h1|C|877
*
8B2L|1|h1|G|956
8B2L|1|h1|G|957
8B2L|1|h1|A|958
8B2L|1|h1|U|959

Current chains

Chain h1

18S rRNA

Nearby chains

Chain F1

40S ribosomal protein S3a

Chain K1

40S ribosomal protein S27

Chain W1

30S ribosomal protein S15, chloroplastic