IL_8B2L_224
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8B2L|1|h1|G|879
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_224 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.0765
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8B2L|1|h1|C|877
8B2L|1|h1|G|878
8B2L|1|h1|G|879
8B2L|1|h1|G|880
8B2L|1|h1|G|881
*
8B2L|1|h1|C|953
8B2L|1|h1|A|954
8B2L|1|h1|A|955
8B2L|1|h1|G|956
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain F1
- 40S ribosomal protein S3a
- Chain J1
- 40S ribosomal protein S26
- Chain P3
- 60S ribosomal protein L30-like
- Chain W1
- 30S ribosomal protein S15, chloroplastic
Coloring options: