IL_8B2L_225
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_225 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.1016
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8B2L|1|h1|G|888
8B2L|1|h1|U|889
8B2L|1|h1|A|890
8B2L|1|h1|U|891
*
8B2L|1|h1|A|927
8B2L|1|h1|G|928
8B2L|1|h1|A|929
8B2L|1|h1|C|930
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain F1
- 40S ribosomal protein S3a
- Chain J1
- 40S ribosomal protein S26
- Chain S1
- 40S ribosomal protein S14-2
- Chain a3
- 60S ribosomal protein L37a
- Chain o3
- uL2 (60S ribosomal protein L8)
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