IL_8B2L_240
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAAGGA(OMU)UG*CUUGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8B2L|1|h1|G|1231
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_240 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2969
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06668.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|G|1227
8B2L|1|h1|U|1228
8B2L|1|h1|A|1229
8B2L|1|h1|A|1230
8B2L|1|h1|G|1231
8B2L|1|h1|G|1232
8B2L|1|h1|A|1233
8B2L|1|h1|OMU|1234
8B2L|1|h1|U|1235
8B2L|1|h1|G|1236
*
8B2L|1|h1|C|1255
8B2L|1|h1|U|1256
8B2L|1|h1|U|1257
8B2L|1|h1|G|1258
8B2L|1|h1|A|1259
8B2L|1|h1|U|1260
8B2L|1|h1|U|1261
8B2L|1|h1|C|1262
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain C1
- 40S ribosomal protein S12
- Chain N1
- ubiquitin-40S ribosomal protein S27a-like
- Chain V1
- 40S ribosomal protein S29
- Chain l1
- 40S ribosomal protein S10-1-like
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