IL_8B2L_244
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|h1|U|1437, 8B2L|1|h1|G|1440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_244 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1123
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8B2L|1|h1|U|1279
8B2L|1|h1|G|1280
8B2L|1|h1|G|1281
*
8B2L|1|h1|U|1435
8B2L|1|h1|C|1436
8B2L|1|h1|U|1437
8B2L|1|h1|G|1438
8B2L|1|h1|U|1439
8B2L|1|h1|G|1440
8B2L|1|h1|A|1441
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain R1
- 40S ribosomal protein S20-2
- Chain V1
- 40S ribosomal protein S29
- Chain a1
- 40S ribosomal protein S3-2-like
- Chain i2
- Transfer RNA; tRNA
- Chain l1
- 40S ribosomal protein S10-1-like
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