IL_8B2L_253
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUUUAUAGC*GUAA(PSU)C
- Length
- 15 nucleotides
- Bulged bases
- 8B2L|1|h1|U|1498, 8B2L|1|h1|A|1523
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_253 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2056
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|G|1493
8B2L|1|h1|U|1494
8B2L|1|h1|U|1495
8B2L|1|h1|U|1496
8B2L|1|h1|A|1497
8B2L|1|h1|U|1498
8B2L|1|h1|A|1499
8B2L|1|h1|G|1500
8B2L|1|h1|C|1501
*
8B2L|1|h1|G|1520
8B2L|1|h1|U|1521
8B2L|1|h1|A|1522
8B2L|1|h1|A|1523
8B2L|1|h1|PSU|1524
8B2L|1|h1|C|1525
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain R1
- 40S ribosomal protein S20-2
- Chain V1
- 40S ribosomal protein S29
- Chain a1
- 40S ribosomal protein S3-2-like
Coloring options: