IL_8B2L_259
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_259 not in the Motif Atlas
- Geometric match to IL_5Z1I_002
- Geometric discrepancy: 0.2869
- The information below is about IL_5Z1I_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8B2L|1|h1|C|1650
8B2L|1|h1|G|1651
8B2L|1|h1|C|1652
*
8B2L|1|h1|G|1762
8B2L|1|h1|A|1763
8B2L|1|h1|A|1764
8B2L|1|h1|G|1765
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain B1
- mRNA
- Chain M1
- 40S ribosomal protein S30
- Chain T1
- 40S ribosomal protein S23
- Chain i2
- Transfer RNA; tRNA
- Chain p3
- 60S ribosomal protein L41
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