IL_8B2L_280

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_280 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0715

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8B2L|1|A3|G|1455
8B2L|1|A3|U|1456
8B2L|1|A3|A|1457
8B2L|1|A3|G|1458
8B2L|1|A3|U|1459
8B2L|1|A3|A2M|1460
8B2L|1|A3|OMG|1461
*
8B2L|1|A3|C|2357
8B2L|1|A3|G|2358
8B2L|1|A3|A|2359
8B2L|1|A3|A|2360
8B2L|1|A3|A|2361
8B2L|1|A3|C|2362

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain j3

50S ribosomal protein L22, chloroplastic

Chain s3

uL4 (60S ribosomal protein L4)