IL_8B2L_288

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGA*(OMU)ACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_288 not in the Motif Atlas

Homologous match to IL_8P9A_327

Geometric discrepancy: 0.0935

The information below is about IL_8P9A_327

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

8B2L|1|A3|C|2721
8B2L|1|A3|U|2722
8B2L|1|A3|G|2723
8B2L|1|A3|A|2724
*
8B2L|1|A3|OMU|2738
8B2L|1|A3|A|2739
8B2L|1|A3|C|2740
8B2L|1|A3|G|2741

Current chains

Chain A3

25S rRNA

Nearby chains

Chain G3

60S ribosomal protein L18-2-like

Chain J3

60S ribosomal protein L21-1-like

Chain O3

60S ribosomal protein L29

Chain Z3

60S ribosomal protein L44

Chain h3

60S ribosomal protein L5-like