IL_8B2L_308

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(PSU)(OMC)*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_308 not in the Motif Atlas

Geometric match to IL_4PCJ_002

Geometric discrepancy: 0.2354

The information below is about IL_4PCJ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

8B2L|1|h1|G|1216
8B2L|1|h1|PSU|1217
8B2L|1|h1|OMC|1218
*
8B2L|1|h1|G|1453
8B2L|1|h1|U|1454
8B2L|1|h1|U|1455

Current chains

Chain h1

18S rRNA

Nearby chains

Chain N1

ubiquitin-40S ribosomal protein S27a-like

Chain V1

40S ribosomal protein S29

Chain Y1

40S ribosomal protein S15-like

Chain l1

40S ribosomal protein S10-1-like