IL_8B2L_310
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8B2L|1|h1|C|1277, 8B2L|1|h1|U|1437, 8B2L|1|h1|G|1440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_310 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0864
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|h1|U|1275
8B2L|1|h1|G|1276
8B2L|1|h1|C|1277
8B2L|1|h1|A|1278
8B2L|1|h1|U|1279
8B2L|1|h1|G|1280
8B2L|1|h1|G|1281
*
8B2L|1|h1|U|1435
8B2L|1|h1|C|1436
8B2L|1|h1|U|1437
8B2L|1|h1|G|1438
8B2L|1|h1|U|1439
8B2L|1|h1|G|1440
8B2L|1|h1|A|1441
8B2L|1|h1|U|1442
8B2L|1|h1|G|1443
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain B1
- mRNA
- Chain R1
- 40S ribosomal protein S20-2
- Chain V1
- 40S ribosomal protein S29
- Chain a1
- 40S ribosomal protein S3-2-like
- Chain i2
- Transfer RNA; tRNA
- Chain l1
- 40S ribosomal protein S10-1-like
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