IL_8B5L_077

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8B5L|1|5|A|1899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_077 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.2234

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8B5L|1|5|U|1896
8B5L|1|5|A|1897
8B5L|1|5|U|1898
8B5L|1|5|A|1899
8B5L|1|5|G|1900
8B5L|1|5|A|1901
8B5L|1|5|C|1902
8B5L|1|5|A|1903
8B5L|1|5|G|1904
*
8B5L|1|5|C|1961
8B5L|1|5|C|1962
8B5L|1|5|G|1963
8B5L|1|5|A|1964
8B5L|1|5|A|1965

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

Ubiquitin-60S ribosomal protein L40