IL_8B5L_099

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_099 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.1078

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8B5L|1|5|A|2675
8B5L|1|5|A|2676
8B5L|1|5|C|2677
8B5L|1|5|A|2678
8B5L|1|5|A|2679
8B5L|1|5|U|2680
8B5L|1|5|G|2681
*
8B5L|1|5|C|3582
8B5L|1|5|U|3583
8B5L|1|5|A|3584
8B5L|1|5|U|3585

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain d

60S ribosomal protein L31