IL_8B5L_107
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8B5L|1|5|A|3395, 8B5L|1|5|U|3411, 8B5L|1|5|C|3415
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_107 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0697
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B5L|1|5|C|3392
8B5L|1|5|G|3393
8B5L|1|5|A|3394
8B5L|1|5|A|3395
8B5L|1|5|G|3396
8B5L|1|5|G|3397
*
8B5L|1|5|U|3409
8B5L|1|5|G|3410
8B5L|1|5|U|3411
8B5L|1|5|U|3412
8B5L|1|5|G|3413
8B5L|1|5|A|3414
8B5L|1|5|C|3415
8B5L|1|5|G|3416
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain p
- 60S ribosomal protein L37a
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