IL_8B5L_129
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- U(B8H)GA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_129 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.2713
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8B5L|1|5|U|4041
8B5L|1|5|B8H|4042
8B5L|1|5|G|4043
8B5L|1|5|A|4044
*
8B5L|1|5|U|4058
8B5L|1|5|A|4059
8B5L|1|5|C|4060
8B5L|1|5|A|4061
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain Q
- Ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a-like
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