IL_8B5L_145
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_145 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0841
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8B5L|1|5|C|4342
8B5L|1|5|U|4343
8B5L|1|5|C|4344
8B5L|1|5|A|4345
8B5L|1|5|G|4346
8B5L|1|5|U|4347
8B5L|1|5|A|4348
8B5L|1|5|C|4349
*
8B5L|1|5|G|4354
8B5L|1|5|G|4355
8B5L|1|5|A|4356
8B5L|1|5|A|4357
8B5L|1|5|C|4358
8B5L|1|5|C|4359
8B5L|1|5|G|4360
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain H
- 60S ribosomal protein L9
- Chain V
- 60S ribosomal protein L23
- Chain m
- Ubiquitin-60S ribosomal protein L40
Coloring options: