IL_8B5L_147
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- ACAU(PSU)U*ACCAU
- Length
- 11 nucleotides
- Bulged bases
- 8B5L|1|5|C|4416
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_147 not in the Motif Atlas
- Homologous match to IL_8GLP_317
- Geometric discrepancy: 0.2067
- The information below is about IL_8GLP_317
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31690.2
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
8B5L|1|5|A|4370
8B5L|1|5|C|4371
8B5L|1|5|A|4372
8B5L|1|5|U|4373
8B5L|1|5|PSU|4374
8B5L|1|5|U|4375
*
8B5L|1|5|A|4415
8B5L|1|5|C|4416
8B5L|1|5|C|4417
8B5L|1|5|A|4418
8B5L|1|5|U|4419
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- 60S ribosomal protein L23
- Chain W
- Ribosomal protein L24
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