IL_8B5L_163

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8B5L|1|5|G|4788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_163 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1988

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8B5L|1|5|G|4739
8B5L|1|5|U|4740
8B5L|1|5|U|4741
*
8B5L|1|5|G|4784
8B5L|1|5|U|4785
8B5L|1|5|C|4786
8B5L|1|5|A|4787
8B5L|1|5|G|4788
8B5L|1|5|C|4789

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain d

60S ribosomal protein L31