IL_8BH6_026

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAGCC*GAGGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_026 not in the Motif Atlas

Geometric match to IL_5J7L_030

Geometric discrepancy: 0.1934

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8BH6|1|a|U|613
8BH6|1|a|G|614
8BH6|1|a|A|615
8BH6|1|a|A|616
8BH6|1|a|A|617
8BH6|1|a|G|618
8BH6|1|a|C|619
8BH6|1|a|C|620
*
8BH6|1|a|G|636
8BH6|1|a|A|637
8BH6|1|a|G|638
8BH6|1|a|G|639
8BH6|1|a|G|640

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain h

30S ribosomal protein S8

Chain p

30S ribosomal protein S16