IL_8BH6_031

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAG*CGCAGAGA

Length

13 nucleotides

Bulged bases

8BH6|1|a|A|710

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_031 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2643

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8BH6|1|a|U|692
8BH6|1|a|G|693
8BH6|1|a|U|694
8BH6|1|a|A|695
8BH6|1|a|G|696
*
8BH6|1|a|C|707
8BH6|1|a|G|708
8BH6|1|a|C|709
8BH6|1|a|A|710
8BH6|1|a|G|711
8BH6|1|a|A|712
8BH6|1|a|G|713
8BH6|1|a|A|714

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11