IL_8BH7_056

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

GCAG*CAAAUC

Length

10 nucleotides

Bulged bases

8BH7|1|a|A|1291

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH7_056 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.4139

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8BH7|1|a|G|1266
8BH7|1|a|C|1267
8BH7|1|a|A|1268
8BH7|1|a|G|1269
*
8BH7|1|a|C|1288
8BH7|1|a|A|1289
8BH7|1|a|A|1290
8BH7|1|a|A|1291
8BH7|1|a|U|1292
8BH7|1|a|C|1293

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z