IL_8BHF_007
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_007 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.157
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BHF|1|A2|C|30
8BHF|1|A2|U|31
8BHF|1|A2|G|32
8BHF|1|A2|A|33
8BHF|1|A2|A|34
8BHF|1|A2|U|35
8BHF|1|A2|U|36
8BHF|1|A2|U|37
*
8BHF|1|A2|A|44
8BHF|1|A2|U|45
8BHF|1|A2|U|46
8BHF|1|A2|A|47
8BHF|1|A2|G|48
8BHF|1|A2|U|49
8BHF|1|A2|C|50
8BHF|1|A2|A|51
8BHF|1|A2|G|52
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain N1
- 60S ribosomal protein L27a
- Chain W1
- Ribosomal protein L37
- Chain b1
- Ribosomal protein L36a like
- Chain t3
- 60S ribosomal protein L13
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