IL_8BHF_040

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8BHF|1|A2|G|750, 8BHF|1|A2|C|914

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2479

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BHF|1|A2|G|747
8BHF|1|A2|A|748
8BHF|1|A2|A|749
8BHF|1|A2|G|750
8BHF|1|A2|G|751
8BHF|1|A2|U|752
8BHF|1|A2|G|753
8BHF|1|A2|G|875
*
8BHF|1|A2|U|909
8BHF|1|A2|G|910
8BHF|1|A2|U|911
8BHF|1|A2|U|912
8BHF|1|A2|A|913
8BHF|1|A2|C|914
8BHF|1|A2|A|915
8BHF|1|A2|G|916
8BHF|1|A2|C|917

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

60S ribosomal protein L18a

Chain e1

60S acidic ribosomal protein P0

Chain u3

60S ribosomal protein L14