IL_8BHF_087

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8BHF|1|A2|A|1960

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_087 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2583

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8BHF|1|A2|U|1957
8BHF|1|A2|A|1958
8BHF|1|A2|U|1959
8BHF|1|A2|A|1960
8BHF|1|A2|G|1961
8BHF|1|A2|A|1962
8BHF|1|A2|C|1963
8BHF|1|A2|A|1964
8BHF|1|A2|G|1965
*
8BHF|1|A2|C|2022
8BHF|1|A2|C|2023
8BHF|1|A2|G|2024
8BHF|1|A2|A|2025
8BHF|1|A2|A|2026

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

60S ribosomal protein L18a

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain e1

60S acidic ribosomal protein P0