IL_8BHF_095

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_095 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0667

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8BHF|1|A2|G|2361
8BHF|1|A2|U|2362
8BHF|1|A2|A|2363
8BHF|1|A2|G|2364
8BHF|1|A2|U|2365
8BHF|1|A2|A|2366
8BHF|1|A2|G|2367
*
8BHF|1|A2|C|3853
8BHF|1|A2|G|3854
8BHF|1|A2|A|3855
8BHF|1|A2|A|3856
8BHF|1|A2|A|3857
8BHF|1|A2|C|3858

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain l3

60S ribosomal protein L4