IL_8BHF_102

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_102 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.1977

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8BHF|1|A2|C|2592
8BHF|1|A2|G|2593
8BHF|1|A2|A|2594
8BHF|1|A2|U|2595
8BHF|1|A2|C|2596
*
8BHF|1|A2|G|2755
8BHF|1|A2|G|2756
8BHF|1|A2|G|2757
8BHF|1|A2|A|2758
8BHF|1|A2|G|2759

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain M1

60S ribosomal protein L27

Chain T1

60S ribosomal protein L34

Chain j3

60S ribosomal protein L8