IL_8BHF_107
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 8BHF|1|A2|U|2664, 8BHF|1|A2|A|2677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_107 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1559
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BHF|1|A2|U|2659
8BHF|1|A2|G|2660
8BHF|1|A2|G|2661
8BHF|1|A2|A|2662
8BHF|1|A2|A|2663
8BHF|1|A2|U|2664
8BHF|1|A2|G|2665
*
8BHF|1|A2|C|2675
8BHF|1|A2|G|2676
8BHF|1|A2|A|2677
8BHF|1|A2|G|2678
8BHF|1|A2|A|2679
8BHF|1|A2|G|2680
8BHF|1|A2|A|2681
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain E1
- Ribosomal protein L19
- Chain M1
- 60S ribosomal protein L27
- Chain O3
- ribosomal protein uS15
- Chain P1
- 60S ribosomal protein L30
- Chain T1
- 60S ribosomal protein L34
- Chain c1
- 60S ribosomal protein L37a
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