IL_8BHF_109
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_109 not in the Motif Atlas
- Homologous match to IL_5TBW_074
- Geometric discrepancy: 0.1015
- The information below is about IL_5TBW_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8BHF|1|A2|A|2835
8BHF|1|A2|A|2836
8BHF|1|A2|C|2837
8BHF|1|A2|A|2838
8BHF|1|A2|A|2839
8BHF|1|A2|U|2840
8BHF|1|A2|G|2841
*
8BHF|1|A2|C|3845
8BHF|1|A2|U|3846
8BHF|1|A2|A|3847
8BHF|1|A2|U|3848
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 60S ribosomal protein L17
- Chain Q1
- 60S ribosomal protein L31
- Chain k3
- Ribosomal protein L3
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