IL_8BHF_117

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8BHF|1|A2|A|3658, 8BHF|1|A2|U|3674, 8BHF|1|A2|C|3678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_117 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0798

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8BHF|1|A2|C|3655
8BHF|1|A2|G|3656
8BHF|1|A2|A|3657
8BHF|1|A2|A|3658
8BHF|1|A2|G|3659
8BHF|1|A2|G|3660
*
8BHF|1|A2|U|3672
8BHF|1|A2|G|3673
8BHF|1|A2|U|3674
8BHF|1|A2|U|3675
8BHF|1|A2|G|3676
8BHF|1|A2|A|3677
8BHF|1|A2|C|3678
8BHF|1|A2|G|3679

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain c1

60S ribosomal protein L37a

Chain j3

60S ribosomal protein L8