IL_8BHF_119

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8BHF|1|A2|A|3741, 8BHF|1|A2|A|3742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_119 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1092

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BHF|1|A2|U|3699
8BHF|1|A2|G|3700
*
8BHF|1|A2|U|3740
8BHF|1|A2|A|3741
8BHF|1|A2|A|3742
8BHF|1|A2|A|3743

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain j3

60S ribosomal protein L8

Chain n1

CCR4-NOT transcription complex subunit 3