IL_8BHF_139
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_139 not in the Motif Atlas
- Geometric match to IL_5TBW_099
- Geometric discrepancy: 0.1023
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8BHF|1|A2|C|4229
8BHF|1|A2|A|4230
8BHF|1|A2|G|4231
*
8BHF|1|A2|C|4249
8BHF|1|A2|G|4250
8BHF|1|A2|U|4251
8BHF|1|A2|G|4252
8BHF|1|A2|G|4253
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain G1
- 60S ribosomal protein L21
- Chain m3
- 60S ribosomal protein L5
- Chain s3
- 60S ribosomal protein L11
Coloring options: