IL_8BHF_141

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_141 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2669

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8BHF|1|A2|U|4281
8BHF|1|A2|U|4282
8BHF|1|A2|G|4283
8BHF|1|A2|A|4284
*
8BHF|1|A2|U|4298
8BHF|1|A2|A|4299
8BHF|1|A2|C|4300
8BHF|1|A2|A|4301

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D1

Ribosomal protein L18

Chain G1

60S ribosomal protein L21

Chain O1

60S ribosomal protein L29

Chain b1

Ribosomal protein L36a like

Chain m3

60S ribosomal protein L5