IL_8BHF_158
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_158 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0811
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8BHF|1|A2|C|4582
8BHF|1|A2|U|4583
8BHF|1|A2|C|4584
8BHF|1|A2|A|4585
8BHF|1|A2|G|4586
8BHF|1|A2|U|4587
8BHF|1|A2|A|4588
8BHF|1|A2|C|4589
*
8BHF|1|A2|G|4594
8BHF|1|A2|G|4595
8BHF|1|A2|A|4596
8BHF|1|A2|A|4597
8BHF|1|A2|C|4598
8BHF|1|A2|C|4599
8BHF|1|A2|G|4600
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain I1
- 60S ribosomal protein L23
- Chain Z1
- Ubiquitin-60S ribosomal protein L40
- Chain k3
- Ribosomal protein L3
- Chain q3
- 60S ribosomal protein L9
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